tool: cBioPortal

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cBioPortal is an open-source platform for visualizing and exploring multidimensional cancer genomics data through an intuitive web interface.

Data life cycle

Plan

Collect

Process

Analyse

Preserve

Share

Reuse

Tool information

via bio.tools

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Resources

Website

Manuals

User guide

Metadata and data standards

Supported data types

Specific documentation, e.g. versioning

Documentation includes development, deployment and usage documentation

Integrations with other tools

Slide Score - Enables slide viewer embedding within cBioPortal interface as described here
XNAT using xnat2cbio and following the EOSC4Cancer manual
xOpat following the EOSC4Cancer manual
cBioPortal can easily link to other tools, although the tools must support the appropriate security measures.

Other

Health-RI support - Service desk for users in the Health-RI hosted environment
GENIE data - Large multi-institutional cancer dataset compatible with cBioPortal

Known gaps or user needs

Compatible with